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International Journal of Science, Strategic Management and Technology

An International, Peer-Reviewed, Open Access Scholarly Journal Indexed in recognized academic databases · DOI via Crossref The journal adheres to established scholarly publishing, peer-review, and research ethics guidelines set by the UGC

ISSN: 3108-1762 (Online)
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INVESTIGATING THE GUT MICROBIOME USING SIMPLE FERMENTATION EXPERIMENTS

AUTHORS:
Meera V. Nair
Ankit A. Choudhary
Mentor
Dr. Pooja M. Iyer
Affiliation
Department of Biochemistry,
Zenith College of Advanced Sciences, India
CC BY 4.0 License:
This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
Abstract

The human gut microbiome is a complex community of microorganisms that plays a pivotal role in host metabolism, immunity, and overall health. While high-throughput sequencing and multi-omics approaches have advanced understanding significantly, simple fermentation experiments—especially in vitro batch and continuous culture systems—remain essential tools for modeling microbial interactions, elucidating metabolic pathways, and testing dietary effects on microbial dynamics. This research article investigates fundamental principles of gut microbiome ecology by applying controlled fermentation experiments under laboratory conditions. Through manipulating substrates (e.g., dietary fibers, prebiotics), environmental parameters (pH, anaerobiosis), and host-associated factors (bile acids), we demonstrate how microbial communities respond functionally and compositionally. Results reveal distinct fermentation profiles correlated with substrate complexity, with short-chain fatty acid (SCFA) production and microbial shifts reflecting metabolic capabilities of key taxa. The study underscores the utility of simple fermentation models for hypothesis testing and educational purposes, while acknowledging limitations relative to in vivo systems. Findings have implications for designing targeted dietary interventions and understanding basic microbial ecology within the gut.

Keywords
Gut microbiome · Fermentation experiments · In vitro fermentation · Short-chain fatty acids · Microbial ecology · Dietary fibers · Prebiotics
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Nair, M. V. & Choudhary, A. A. (2026). Investigating the Gut Microbiome Using Simple Fermentation Experiments. International Journal of Science, Strategic Management and Technology, 02(02), 1-9. https://doi.org/10.55041/ijsmt.v2i2.002

Nair, Meera, and Ankit Choudhary. "Investigating the Gut Microbiome Using Simple Fermentation Experiments." International Journal of Science, Strategic Management and Technology, vol. 02, no. 02, 2026, pp. 1-9. doi:https://doi.org/10.55041/ijsmt.v2i2.002.

Nair, Meera, and Ankit Choudhary. "Investigating the Gut Microbiome Using Simple Fermentation Experiments." International Journal of Science, Strategic Management and Technology 02, no. 02 (2026): 1-9. https://doi.org/https://doi.org/10.55041/ijsmt.v2i2.002.

References

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Ethics and Compliance
✓ All ethical standards met
This article has undergone plagiarism screening and double-blind peer review. Editorial policies have been followed. Authors retain copyright under CC BY-NC 4.0 license. The research complies with ethical standards and institutional guidelines.
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